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Ptf1aos pancreas specific transcription factor 1a, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 102637107, updated on 8-Feb-2024

Summary

Official Symbol
Ptf1aosprovided by MGI
Official Full Name
pancreas specific transcription factor 1a, opposite strandprovided by MGI
Primary source
MGI:MGI:3651438
See related
Ensembl:ENSMUSG00000085388 AllianceGenome:MGI:3651438
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm13336
Expression
Biased expression in small intestine adult (RPKM 8.3), stomach adult (RPKM 4.6) and 4 other tissues See more
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Genomic context

Location:
2 A3; 2 13.36 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (19446319..19451485, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (19441508..19446674, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_03820 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:19310470-19310705 Neighboring gene methionine sulfoxide reductase B2 Neighboring gene STARR-seq mESC enhancer starr_03823 Neighboring gene STARR-seq mESC enhancer starr_03825 Neighboring gene STARR-positive B cell enhancer ABC_E11703 Neighboring gene predicted gene, 33940 Neighboring gene predicted gene 13344 Neighboring gene RIKEN cDNA 1810010K12 gene Neighboring gene RIKEN cDNA 4921504E06 gene Neighboring gene pancreas specific transcription factor, 1a Neighboring gene STARR-seq mESC enhancer starr_03826 Neighboring gene STARR-positive B cell enhancer mm9_chr2:19427465-19427766 Neighboring gene STARR-positive B cell enhancer mm9_chr2:19450447-19450747 Neighboring gene STARR-seq mESC enhancer starr_03827

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Other Names

  • normal AK

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131924.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK053418
    Related
    ENSMUST00000122978.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    19446319..19451485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)