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Mannr Mecom adjacent non-protein coding RNA [ Mus musculus (house mouse) ]

Gene ID: 102636083, updated on 8-Feb-2024

Summary

Official Symbol
Mannrprovided by MGI
Official Full Name
Mecom adjacent non-protein coding RNAprovided by MGI
Primary source
MGI:MGI:5564803
See related
Ensembl:ENSMUSG00000102590 AllianceGenome:MGI:5564803
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Manr
Summary
Acts upstream of or within regulation of gene expression. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Mannr in Genome Data Viewer
Location:
3 A3; 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (29945166..29978340)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (29891017..29924191)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene EGF-like and EMI domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_07281 Neighboring gene microRNA 21b Neighboring gene predicted gene, 42197 Neighboring gene STARR-seq mESC enhancer starr_07282 Neighboring gene STARR-seq mESC enhancer starr_07283 Neighboring gene predicted gene, 33206 Neighboring gene STARR-seq mESC enhancer starr_07284 Neighboring gene STARR-seq mESC enhancer starr_07285 Neighboring gene MDS1 and EVI1 complex locus Neighboring gene predicted gene, 52621 Neighboring gene MDS1 and EVI1 complex locus, opposite strand

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110437.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK147070
    Related
    ENSMUST00000193549.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    29945166..29978340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)