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Platr11 pluripotency associated transcript 11 [ Mus musculus (house mouse) ]

Gene ID: 102635911, updated on 24-Apr-2022

Summary

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Official Symbol
Platr11provided by MGI
Official Full Name
pluripotency associated transcript 11provided by MGI
Primary source
MGI:MGI:5504090
See related
AllianceGenome:MGI:5504090
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm26975; linc1405
Summary
Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Platr11 in Genome Data Viewer
Location:
9 F3; 9
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (118231085..118276245, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (118402017..118447177, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53195 Neighboring gene predicted gene, 33088 Neighboring gene CRISPRi-validated cis-regulatory element for Eomes, Platr11 and Vill Neighboring gene RIKEN cDNA 4933432G23 gene Neighboring gene predicted gene, 33285 Neighboring gene predicted gene, 33408 Neighboring gene predicted gene, 22479 Neighboring gene eomesodermin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A Linc1405/Eomes Complex Promotes Cardiac Mesoderm Specification and Cardiogenesis. Guo X, et al. Cell Stem Cell, 2018 Jun 1. PMID 29754779
  2. lincRNAs act in the circuitry controlling pluripotency and differentiation. Guttman M, et al. Nature, 2011 Aug 28. PMID 21874018, Free PMC Article
  3. Local regulation of gene expression by lncRNA promoters, transcription and splicing. Engreitz JM, et al. Nature, 2016 Nov 17. PMID 27783602, Free PMC Article
  4. Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Bergmann JH, et al. Genome Res, 2015 Sep. PMID 26048247, Free PMC Article
  5. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    118231085..118276245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001779318.2 RNA Sequence

Nucleotide Protein
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