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Ttc39aos1 Ttc39a opposite strand RNA 1 [ Mus musculus (house mouse) ]

Gene ID: 102635290, updated on 14-May-2024

Summary

Official Symbol
Ttc39aos1provided by MGI
Official Full Name
Ttc39a opposite strand RNA 1provided by MGI
Primary source
MGI:MGI:3651956
See related
Ensembl:ENSMUSG00000085873 AllianceGenome:MGI:3651956
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm12750; lincRNA-EPS
Summary
Enables chromatin binding activity; ribonucleoprotein complex binding activity; and transcription cis-regulatory region binding activity. Acts upstream of or within with a negative effect on inflammatory response and transcription by RNA polymerase II. Acts upstream of or within gene expression; nucleosome organization; and response to lipopolysaccharide. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver E14.5 (RPKM 35.8), liver E14 (RPKM 27.6) and 16 other tissues See more
Orthologs
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Genomic context

See Ttc39aos1 in Genome Data Viewer
Location:
4 C7; 4 51.29 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (109259476..109263454, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (109402279..109406257, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene epidermal growth factor receptor pathway substrate 15 Neighboring gene predicted gene, 52702 Neighboring gene basic leucine zipper and W2 domains 1 pseudogene Neighboring gene tetratricopeptide repeat domain 39A Neighboring gene STARR-seq mESC enhancer starr_11070 Neighboring gene ring finger protein 11 Neighboring gene RIKEN cDNA 4930522H14 gene Neighboring gene STARR-positive B cell enhancer ABC_E4645

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131195.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BB079355, KC190025
    Related
    ENSMUST00000247239.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    109259476..109263454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)