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Gm16638 predicted gene, 16638 [ Mus musculus (house mouse) ]

Gene ID: 102631889, updated on 8-Feb-2024

Summary

Official Symbol
Gm16638provided by MGI
Official Full Name
predicted gene, 16638provided by MGI
Primary source
MGI:MGI:4439562
See related
Ensembl:ENSMUSG00000087088 AllianceGenome:MGI:4439562
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in bladder adult (RPKM 2.5), cerebellum adult (RPKM 1.6) and 25 other tissues See more
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Genomic context

See Gm16638 in Genome Data Viewer
Location:
7 D3; 7 47.43 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (83246256..83281049, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (83597048..83631841, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_19407 Neighboring gene STARR-positive B cell enhancer mm9_chr7:90574679-90574980 Neighboring gene retinoblastoma binding protein 6 pseudogene Neighboring gene predicted gene 10610 Neighboring gene STARR-seq mESC enhancer starr_19409 Neighboring gene transmembrane channel-like gene family 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:90803780-90804044 Neighboring gene StAR related lipid transfer domain containing 5 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:90809590-90809791 Neighboring gene interleukin 16 Neighboring gene STARR-positive B cell enhancer ABC_E8840 Neighboring gene 3-phosphoglycerate dehydrogenase, pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166696.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158576
  2. NR_166697.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158576
    Related
    ENSMUST00000148687.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    83246256..83281049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)