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LOC102603790 uncharacterized LOC102603790 [ Solanum tuberosum (potato) ]

Gene ID: 102603790, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102603790
Gene description
uncharacterized LOC102603790
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102603790 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006238947.1 (655285..663359, complement)

NW_006238947.1Genomic Context describing neighboring genes Neighboring gene transcription factor AS1 Neighboring gene E3 ubiquitin-protein ligase PRT6 Neighboring gene kinesin-like protein KIF22 Neighboring gene metallothionein-like protein type 2 B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238947.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC102603790

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006238947.1 Reference SolTub_3.0 Primary Assembly

    Range
    655285..663359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015305971.1 → XP_015161457.1  uncharacterized protein LOC102603790 isoform X1

    Conserved Domains (3) summary
    smart00717
    Location:111 → 159
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:59 → 105
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:114 → 174
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  2. XM_006340964.2 → XP_006341026.1  uncharacterized protein LOC102603790 isoform X2

    UniProtKB/TrEMBL
    M1AHL2
    Conserved Domains (3) summary
    smart00717
    Location:111 → 159
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:59 → 105
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:114 → 174
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  3. XM_006340963.2 → XP_006341025.1  uncharacterized protein LOC102603790 isoform X1

    Conserved Domains (3) summary
    smart00717
    Location:111 → 159
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:59 → 105
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:114 → 174
    Myb_DNA-bind_6; Myb-like DNA-binding domain
Nucleotide Protein
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