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LOC102594238 tyrosine decarboxylase 1-like [ Solanum tuberosum (potato) ]

Gene ID: 102594238, updated on 9-Apr-2025
Gene symbol
LOC102594238
Gene description
tyrosine decarboxylase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2025_04 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239064.1 (1404782..1406759)

NW_006239064.1Genomic Context describing neighboring genes Neighboring gene probable sugar phosphate/phosphate translocator At4g32390 Neighboring gene uncharacterized LOC107061464 Neighboring gene uncharacterized LOC102594015 Neighboring gene uncharacterized LOC107061455 Neighboring gene uncharacterized LOC102595559

Genomic Sequence:
NW_006239064 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carboxy-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
tyrosine decarboxylase 1-like

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RefSeqs of Annotated Genomes: GCF_000226075.1-RS_2025_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239064.1 Reference SolTub_3.0 Primary Assembly

    Range
    1404782..1406759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006351914.1 → XP_006351976.1  tyrosine decarboxylase 1-like

    UniProtKB/TrEMBL
    M1C903
    Conserved Domains (1) summary
    cl18945
    Location:24 → 504
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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