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LINC01947 long intergenic non-protein coding RNA 1947 [ Homo sapiens (human) ]

Gene ID: 102557615, updated on 10-Oct-2023

Summary

Official Symbol
LINC01947provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1947provided by HGNC
Primary source
HGNC:HGNC:52771
See related
Ensembl:ENSG00000254130 AllianceGenome:HGNC:52771
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTB-7E3.1
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01947 in Genome Data Viewer
Location:
5q34
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (166905222..166926370, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (167439822..167460963, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (166332227..166353375, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83529 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:165857528-165858338 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:165858339-165859149 Neighboring gene ribosomal protein lateral stalk subunit P0 pseudogene 9 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:166045503-166046049 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:166213149-166213650 Neighboring gene uncharacterized LOC105377706 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:166309500-166310699 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:166405091-166405592 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:166405593-166406092 Neighboring gene teneurin transmembrane protein 2 Neighboring gene uncharacterized LOC101927908 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:166721659-166722858 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:166724659-166725364 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:166730399-166730914 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:166732502-166733336 Neighboring gene uncharacterized LOC124901126

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_108020.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DB052051, DB460551
    Related
    ENST00000523742.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    166905222..166926370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    167439822..167460963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)