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LOC102549726 uncharacterized LOC102549726 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102549726, updated on 13-Apr-2024

Summary

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Symbol
LOC102549726provided by RGD
Full Name
uncharacterized LOC102549726provided by RGD
Primary source
RGD:7707260
See related
AllianceGenome:RGD:7707260
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1566118
Expression
Biased expression in Thymus (RPKM 80.6), Brain (RPKM 65.7) and 9 other tissues See more
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Genomic context

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Location:
20p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (3881208..3883926)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (3876563..3879281)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (4871264..4873982, complement)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene heat shock protein family A (Hsp70) member 1 like Neighboring gene heat shock protein family A (Hsp70) member 1A Neighboring gene heat shock protein family A (Hsp70) member 1B Neighboring gene small nucleolar RNA, C/D box 48 Neighboring gene small nucleolar RNA, C/D box 52 Neighboring gene uncharacterized LOC120098979 Neighboring gene neuraminidase 1 Neighboring gene solute carrier family 44, member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Roles for rat hepatocyte malignant transforming factor (HMTF) in late stage of hepatocarcinogenesis. Suzuki S, et al. Toxicol Pathol, 2011 Dec. PMID 21934139

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110713.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000020

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    3881208..3883926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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