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LINC01340 long intergenic non-protein coding RNA 1340 [ Homo sapiens (human) ]

Gene ID: 102546227, updated on 12-Oct-2019

Summary

Official Symbol
LINC01340provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1340provided by HGNC
Primary source
HGNC:HGNC:50550
See related
Ensembl:ENSG00000250331
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more

Genomic context

See LINC01340 in Genome Data Viewer
Location:
5q15
Exon count:
4
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (97504696..97671051)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene YTH domain family member 1 pseudogene 1 Neighboring gene SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) pseudogene Neighboring gene MT-CYB pseudogene 40 Neighboring gene zinc finger DHHC-type palmitoyltransferase 3 pseudogene

Genomic regions, transcripts, and products

Genomic Sequence:
NC_000005.10 Chromosome 5 Reference GRCh38.p13 Primary Assembly

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
NHGRI GWA Catalog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_105028.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093258, BQ432570
    Related
    ENST00000504012.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    97504696..97671051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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