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LINC01340 long intergenic non-protein coding RNA 1340 [ Homo sapiens (human) ]

Gene ID: 102546227, updated on 10-Dec-2024

Summary

Official Symbol
LINC01340provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1340provided by HGNC
Primary source
HGNC:HGNC:50550
See related
Ensembl:ENSG00000250331 AllianceGenome:HGNC:50550
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC02234
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01340 in Genome Data Viewer
Location:
5q15
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (97504696..97671051)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (98005755..98172118)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (96840400..97006755)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:96724001-96725200 Neighboring gene YTH domain family member 1 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:96735958-96736798 Neighboring gene SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr5:96844479-96845210 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:96855347-96855880 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22834 Neighboring gene MT-CYB pseudogene 40 Neighboring gene zinc finger DHHC-type palmitoyltransferase 3 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_105028.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093258, BQ432570
    Related
    ENST00000504012.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    97504696..97671051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    98005755..98172118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)