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ATG16L1 autophagy related 16 like 1 [ Camelus ferus (Wild Bactrian camel) ]

Gene ID: 102523965, updated on 10-Mar-2024

Summary

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Gene symbol
ATG16L1
Gene description
autophagy related 16 like 1
See related
EnsemblRapid:ENSCFEG00005001596
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelus ferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
102 current BCGSAC_Cfer_1.0 (GCF_009834535.1) 5 NC_045700.1 (91567699..91604549)
101 previous assembly CB1 (GCF_000311805.1) Unplaced Scaffold NW_006211626.1 (1652947..1694431, complement)

Chromosome 5 - NC_045700.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116663802 Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene uncharacterized LOC116663803 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene S-antigen visual arrestin Neighboring gene diacylglycerol kinase delta Neighboring gene transfer RNA alanine (anticodon CGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative stranded viral RNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 16-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelus ferus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCGSAC_Cfer_1.0 Primary Assembly

Genomic

  1. NC_045700.1 Reference BCGSAC_Cfer_1.0 Primary Assembly

    Range
    91567699..91604549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032480528.1 → XP_032336419.1  autophagy-related protein 16-1 isoform X1

    UniProtKB/TrEMBL
    A0A8B8T2Q2
    Related
    ENSCFEP00005002655.1, ENSCFET00005003075.1
    Conserved Domains (3) summary
    cd00200
    Location:333 → 621
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:343 → 380
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 206
    ATG16; Autophagy protein 16 (ATG16)

  2. XM_032480529.1 → XP_032336420.1  autophagy-related protein 16-1 isoform X2

    UniProtKB/TrEMBL
    A0A8B8T2D0
    Related
    ENSCFEP00005002687.1, ENSCFET00005003112.1
    Conserved Domains (3) summary
    cd00200
    Location:317 → 605
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:327 → 364
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 206
    ATG16; Autophagy protein 16 (ATG16)

  3. XM_032480530.1 → XP_032336421.1  autophagy-related protein 16-1 isoform X3

    UniProtKB/TrEMBL
    A0A8B8T2D6
    Related
    ENSCFEP00005002723.1, ENSCFET00005003150.1
    Conserved Domains (3) summary
    cd00200
    Location:298 → 586
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:308 → 345
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:31 → 206
    ATG16; Autophagy protein 16 (ATG16)
Nucleotide Protein
Heading Accession and Version

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