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LINC02147 long intergenic non-protein coding RNA 2147 [ Homo sapiens (human) ]

Gene ID: 102467224, updated on 10-Oct-2023

Summary

Official Symbol
LINC02147provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2147provided by HGNC
Primary source
HGNC:HGNC:53007
See related
AllianceGenome:HGNC:53007
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02147 in Genome Data Viewer
Location:
5q23.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (117730361..118266062)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (118242729..118778606)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (117066056..117601757)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 992 Neighboring gene uncharacterized LOC124901050 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:116868532-116869048 Neighboring gene protein tyrosine phosphatase receptor type D pseudogene Neighboring gene RPL7L1 pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22955 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22956 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:117309435-117310052 Neighboring gene uncharacterized LOC124901051 Neighboring gene long intergenic non-protein coding RNA 2148 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:117718500-117719000 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:117719001-117719501 Neighboring gene long intergenic non-protein coding RNA 2208 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:117740966-117741466 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_80810 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:117814027-117815226

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104997.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC114322, AC114945, AC131386

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    117730361..118266062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    118242729..118778606
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)