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LOC102405498 apolipoprotein A-I [ Bubalus bubalis (water buffalo) ]

Gene ID: 102405498, updated on 2-Dec-2023

Summary

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Gene symbol
LOC102405498
Gene description
apolipoprotein A-I
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Also known as
APOA1
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Genomic context

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See LOC102405498 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 16 NC_059172.1 (57931765..57933785)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 16 NC_058358.1 (57672966..57674986)

Chromosome 16 - NC_059172.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L11 Neighboring gene SIK family kinase 3 Neighboring gene apolipoprotein C-III Neighboring gene apolipoprotein A-I Neighboring gene apolipoprotein A4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-density lipoprotein particle receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein A-I
Names
apolipoprotein A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059172.1 Reference NDDB_SH_1 Primary Assembly

    Range
    57931765..57933785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025266849.2 → XP_025122634.1  apolipoprotein A-I

    Conserved Domains (1) summary
    pfam01442
    Location:73 → 240
    Apolipoprotein; Apolipoprotein A1/A4/E domain
Nucleotide Protein
Heading Accession and Version

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