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CHI3L1 chitinase 3 like 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102399197, updated on 6-Sep-2025
Gene symbol
CHI3L1
Gene description
chitinase 3 like 1
See related
EnsemblRapid:ENSBALG00030002669
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Also known as
MGP-40
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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See CHI3L1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 5 NC_059161.1 (80282426..80292528)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 5 NC_058347.1 (79298762..79308864)

Chromosome 5 - NC_059161.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123465803 Neighboring gene chitinase 1 Neighboring gene myosin binding protein H Neighboring gene adenosine A1 receptor

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
chitinase-3-like protein 1
Names
mammary gland protein

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290968.1 → NP_001277897.1  chitinase-3-like protein 1 precursor

    See identical proteins and their annotated locations for NP_001277897.1

    Status: PROVISIONAL

    Source sequence(s)
    JQ796280
    UniProtKB/Swiss-Prot
    I6YIV5, Q7YS85
    Related
    ENSBALP00030004735.1, ENSBALT00030007425.1
    Conserved Domains (2) summary
    cd02872
    Location:24 → 380
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00636
    Location:23 → 357
    Glyco_18; Glyco_18 domain

RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059161.1 Reference NDDB_SH_1 Primary Assembly

    Range
    80282426..80292528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases