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SH3TC1 SH3 domain and tetratricopeptide repeats 1 [ Alligator sinensis (Chinese alligator) ]

Gene ID: 102375102, updated on 7-Nov-2018

Summary

Gene symbol
SH3TC1
Gene description
SH3 domain and tetratricopeptide repeats 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs

Genomic context

See SH3TC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005841871.1 (995161..1094393, complement)

NW_005841871.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106723221 Neighboring gene HtrA serine peptidase 3 Neighboring gene actin binding LIM protein family member 2 Neighboring gene actin filament associated protein 1

Genomic regions, transcripts, and products

Genomic Sequence:
NW_005841871 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
SH3 domain and tetratricopeptide repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM45574v1 Primary Assembly

Genomic

  1. NW_005841871.1 Reference ASM45574v1 Primary Assembly

    Range
    995161..1094393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025195221.1XP_025051006.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    Conserved Domains (5) summary
    cd11885
    Location:323377
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:11761203
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11791244
    TPR_12; Tetratricopeptide repeat
    cl00214
    Location:829950
    Aldolase_II; Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). ...
    cl26002
    Location:559868
    TPR_11; TPR repeat
  2. XM_014527228.2XP_014382714.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1U7RMQ7
    Conserved Domains (5) summary
    cd11885
    Location:323377
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:11761203
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11791244
    TPR_12; Tetratricopeptide repeat
    cl00214
    Location:829950
    Aldolase_II; Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). ...
    cl26002
    Location:559868
    TPR_11; TPR repeat
  3. XM_006017013.3XP_006017075.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1U7RMQ7
    Conserved Domains (5) summary
    cd11885
    Location:323377
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:11761203
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11791244
    TPR_12; Tetratricopeptide repeat
    cl00214
    Location:829950
    Aldolase_II; Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). ...
    cl26002
    Location:559868
    TPR_11; TPR repeat
  4. XM_025195223.1XP_025051008.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X2

  5. XM_014527226.2XP_014382712.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1U7RMQ7
    Conserved Domains (5) summary
    cd11885
    Location:323377
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:11761203
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11791244
    TPR_12; Tetratricopeptide repeat
    cl00214
    Location:829950
    Aldolase_II; Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). ...
    cl26002
    Location:559868
    TPR_11; TPR repeat
  6. XM_025195206.1XP_025050991.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    Conserved Domains (5) summary
    cd11885
    Location:323377
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:11761203
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11791244
    TPR_12; Tetratricopeptide repeat
    cl00214
    Location:829950
    Aldolase_II; Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). ...
    cl26002
    Location:559868
    TPR_11; TPR repeat
  7. XM_025195230.1XP_025051015.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X4

  8. XM_025195227.1XP_025051012.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X3

  9. XM_025195208.1XP_025050993.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1

    Conserved Domains (5) summary
    cd11885
    Location:323377
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:11761203
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:11791244
    TPR_12; Tetratricopeptide repeat
    cl00214
    Location:829950
    Aldolase_II; Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). ...
    cl26002
    Location:559868
    TPR_11; TPR repeat
  10. XM_025195234.1XP_025051019.1  SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X5

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