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RAB5C RAB5C, member RAS oncogene family [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102367408, updated on 3-Apr-2017

Summary

Gene symbol
RAB5C
Gene description
RAB5C, member RAS oncogene family
See related
Ensembl:ENSLACG00000009896
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs

Genomic context

See RAB5C in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819494.1 (441616..467386)

NW_005819494.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily H member 4 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene dehydrogenase/reductase 1 Neighboring gene NOP9 nucleolar protein Neighboring gene uncharacterized LOC106704031 Neighboring gene cell death inducing DFFA like effector b

Genomic regions, transcripts, and products

Genomic Sequence:
NW_005819494.1 Unplaced Scaffold Reference LatCha1 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Endocytosis, organism-specific biosystem (from KEGG)
    Endocytosis, organism-specific biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
  • Endocytosis, conserved biosystem (from KEGG)
    Endocytosis, conserved biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
  • Phagosome, organism-specific biosystem (from KEGG)
    Phagosome, organism-specific biosystemPhagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is...
  • Phagosome, conserved biosystem (from KEGG)
    Phagosome, conserved biosystemPhagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is...

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Latimeria chalumnae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LatCha1 Primary Assembly

Genomic

  1. NW_005819494.1 Reference LatCha1 Primary Assembly

    Range
    441616..467386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014490174.1XP_014345660.1  ras-related protein Rab-5C isoform X2

  2. XM_005998887.2XP_005998949.1  ras-related protein Rab-5C isoform X1

    UniProtKB/TrEMBL
    H3ANM8
    Related
    ENSLACP00000011249.1, ENSLACT00000011333.1
    Conserved Domains (2) summary
    cd01860
    Location:21183
    Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion
    pfam00071
    Location:23184
    Ras; Ras family
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