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SARM1 sterile alpha and TIR motif containing 1 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102363723, updated on 26-Apr-2024

Summary

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Gene symbol
SARM1
Gene description
sterile alpha and TIR motif containing 1
See related
Ensembl:ENSLACG00000006649
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See SARM1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 23 NC_088161.1 (3643364..3661209)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005821560.1 (228703..246333)

Chromosome 23 - NC_088161.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIF12 Neighboring gene vitronectin Neighboring gene solute carrier family 46 member 1 Neighboring gene solute carrier family 13 member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ nucleosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of MyD88-independent toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to axon injury IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAD(+) hydrolase SARM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088161.1 Reference fLatCha1.pri

    Range
    3643364..3661209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006010997.1 → XP_006011059.1  NAD(+) hydrolase SARM1

    UniProtKB/TrEMBL
    H3ACX9
    Related
    ENSLACP00000007500.1, ENSLACT00000007563.1
    Conserved Domains (4) summary
    cd09502
    Location:452 → 521
    SAM_SARM1-like_repeat2; SAM domain of SARM1-like, repeat 2
    smart00454
    Location:453 → 521
    SAM; Sterile alpha motif
    smart00255
    Location:536 → 676
    TIR; Toll - interleukin 1 - resistance
    cl15755
    Location:383 → 451
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein
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Gene LinkOut

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