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PAFAH1B1A platelet-activating factor acetylhydrolase 1b, regulatory subunit 1a [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102358277, updated on 10-Mar-2024

Summary

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Gene symbol
PAFAH1B1A
Gene description
platelet-activating factor acetylhydrolase 1b, regulatory subunit 1a
See related
Ensembl:ENSLACG00000018191
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
PAFAH1B1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819023.1 (2867396..2927261)

NW_005819023.1Genomic Context describing neighboring genes Neighboring gene MAX network transcriptional repressor a Neighboring gene methyltransferase 16, N6-methyladenosine Neighboring gene clustered mitochondria (cluA/CLU1) homolog a Neighboring gene 60S ribosomal protein L22-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005819023.1 Unplaced Scaffold Reference LatCha1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
platelet-activating factor acetylhydrolase IB subunit alpha
Names
platelet activating factor acetylhydrolase 1b regulatory subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Latimeria chalumnae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LatCha1 Primary Assembly

Genomic

  1. NW_005819023.1 Reference LatCha1 Primary Assembly

    Range
    2867396..2927261
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014491484.1 → XP_014346970.1  platelet-activating factor acetylhydrolase IB subunit alpha

    UniProtKB/TrEMBL
    H3BFN2
    Conserved Domains (5) summary
    COG2319
    Location:97 → 410
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08513
    Location:9 → 35
    LisH; LisH
    pfam10211
    Location:6 → 80
    Ax_dynein_light; Axonemal dynein light chain
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]

  2. XM_005987486.2 → XP_005987548.1  platelet-activating factor acetylhydrolase IB subunit alpha

    See identical proteins and their annotated locations for XP_005987548.1

    UniProtKB/TrEMBL
    H3BFN2
    Conserved Domains (5) summary
    COG2319
    Location:97 → 410
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08513
    Location:9 → 35
    LisH; LisH
    pfam10211
    Location:6 → 80
    Ax_dynein_light; Axonemal dynein light chain
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]

  3. XM_005987487.2 → XP_005987549.1  platelet-activating factor acetylhydrolase IB subunit alpha

    See identical proteins and their annotated locations for XP_005987549.1

    UniProtKB/TrEMBL
    H3BFN2
    Conserved Domains (5) summary
    COG2319
    Location:97 → 410
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08513
    Location:9 → 35
    LisH; LisH
    pfam10211
    Location:6 → 80
    Ax_dynein_light; Axonemal dynein light chain
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]

  4. XM_005987485.2 → XP_005987547.1  platelet-activating factor acetylhydrolase IB subunit alpha

    See identical proteins and their annotated locations for XP_005987547.1

    UniProtKB/TrEMBL
    H3BFN2
    Conserved Domains (5) summary
    COG2319
    Location:97 → 410
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08513
    Location:9 → 35
    LisH; LisH
    pfam10211
    Location:6 → 80
    Ax_dynein_light; Axonemal dynein light chain
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]

  5. XM_005987484.2 → XP_005987546.1  platelet-activating factor acetylhydrolase IB subunit alpha

    See identical proteins and their annotated locations for XP_005987546.1

    UniProtKB/TrEMBL
    H3BFN2
    Related
    ENSLACP00000020703.2, ENSLACT00000020843.2
    Conserved Domains (5) summary
    COG2319
    Location:97 → 410
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08513
    Location:9 → 35
    LisH; LisH
    pfam10211
    Location:6 → 80
    Ax_dynein_light; Axonemal dynein light chain
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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