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LOC102353344 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102353344, updated on 3-Dec-2024

Summary

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Gene symbol
LOC102353344
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
See related
Ensembl:ENSLACG00000000483
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
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Genomic context

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See LOC102353344 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 10 NC_088148.1 (35858315..35868208, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819082.1 (997390..1019171, complement)

Chromosome 10 - NC_088148.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135359220 Neighboring gene coiled-coil domain containing 180 Neighboring gene ral guanine nucleotide dissociation stimulator Neighboring gene bile salt-activated lipase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables globoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088148.1 Reference fLatCha1.pri

    Range
    35858315..35868208 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064564352.1 → XP_064420422.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

    UniProtKB/TrEMBL
    H2ZT23
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases