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sbds SBDS ribosome maturation factor [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102232922, updated on 10-Mar-2024
Gene symbol
sbds
Gene description
SBDS ribosome maturation factor
See related
Ensembl:ENSXMAG00000006065
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
all
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See sbds in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 18 NC_036460.1 (3078664..3081663, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372694.1 (245130..247861, complement)

Chromosome 18 - NC_036460.1Genomic Context describing neighboring genes Neighboring gene claudin-4-like Neighboring gene claudin-4-like Neighboring gene claudin-4-like Neighboring gene tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) Neighboring gene gastrula zinc finger protein XlCGF7.1-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cytosolic ribosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
ribosome maturation protein SBDS
Names
SBDS, ribosome assembly guanine nucleotide exchange factor

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036460.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    3078664..3081663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005813014.3 → XP_005813071.1  ribosome maturation protein SBDS

    UniProtKB/TrEMBL
    A0A3B5PNG9, M3ZV42
    Related
    ENSXMAP00000006085.1, ENSXMAT00000006091.2
    Conserved Domains (3) summary
    COG1500
    Location:9 → 241
    Sdo1; Ribosome maturation protein Sdo1 [Translation, ribosomal structure and biogenesis]
    pfam01172
    Location:17 → 98
    SBDS; Shwachman-Bodian-Diamond syndrome (SBDS) protein
    pfam09377
    Location:107 → 224
    SBDS_C; SBDS protein C-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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