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hmgb1b high mobility group box 1b [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102231753, updated on 13-May-2025
Gene symbol
hmgb1b
Gene description
high mobility group box 1b
See related
Ensembl:ENSXMAG00000006844
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
all
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See hmgb1b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 18 NC_036460.1 (9009603..9013601)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372191.1 (502744..506575, complement)

Chromosome 18 - NC_036460.1Genomic Context describing neighboring genes Neighboring gene beta 3-glucosyltransferase a Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene WD40 repeat domain 95 Neighboring gene olfactory receptor 1500-like Neighboring gene olfactory receptor 52N5-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
high mobility group protein B1-like

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036460.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    9009603..9013601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005796803.2 → XP_005796860.1  high mobility group protein B1-like

    UniProtKB/TrEMBL
    M3ZXB1, M4A1T5
    Related
    ENSXMAP00000006855.1, ENSXMAT00000006863.2
    Conserved Domains (2) summary
    pfam00505
    Location:94 → 161
    HMG_box; HMG (high mobility group) box
    cl00082
    Location:9 → 77
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
Nucleotide Protein Strain
Heading Accession and Version

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