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sox1b SRY-box transcription factor 1b [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102228310, updated on 10-Mar-2024
Gene symbol
sox1b
Gene description
SRY-box transcription factor 1b
See related
Ensembl:ENSXMAG00000019447
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
sox1
Orthologs
all
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See sox1b in Genome Data Viewer
Location:
chromosome: 24
Exon count:
1
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 24 NC_036466.1 (5978114..5981400)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372389.1 (50385..51515)

Chromosome 24 - NC_036466.1Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor (GEF) 7b Neighboring gene uncharacterized LOC111607682 Neighboring gene ATPase phospholipid transporting 11A Neighboring gene tubulin gamma complex component 3

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
transcription factor SOX-1
Names
SRY-box 1
SRY-box transcription factor 1

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036466.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    5978114..5981400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005807966.2 → XP_005808023.1  transcription factor SOX-1

    UniProtKB/TrEMBL
    M4AYE9
    Related
    ENSXMAP00000019494.1, ENSXMAT00000019522.2
    Conserved Domains (2) summary
    cd01388
    Location:42 → 113
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam12336
    Location:112 → 229
    SOXp; SOX transcription factor
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases