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nfil3-6 nuclear factor, interleukin 3 regulated, member 6 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102221048, updated on 10-Mar-2024
Gene symbol
nfil3-6
Gene description
nuclear factor, interleukin 3 regulated, member 6
See related
Ensembl:ENSXMAG00000019527
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
all
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See nfil3-6 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 16 NC_036458.1 (21757408..21761421, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372262.1 (1160880..1164671)

Chromosome 16 - NC_036458.1Genomic Context describing neighboring genes Neighboring gene ral guanine nucleotide dissociation stimulator-like 1 Neighboring gene nuclear factor, interleukin 3 regulated, member 2 Neighboring gene uncharacterized LOC111611605 Neighboring gene paralemmin-2-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
uncharacterized protein LOC102221048

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036458.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    21757408..21761421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023349515.1 → XP_023205283.1  uncharacterized protein LOC102221048 isoform X2

    UniProtKB/TrEMBL
    M4AYN0
    Related
    ENSXMAP00000019575.1, ENSXMAT00000019603.2
    Conserved Domains (1) summary
    cd14694
    Location:87 → 146
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain

  2. XM_005802790.3 → XP_005802847.1  uncharacterized protein LOC102221048 isoform X2

    UniProtKB/TrEMBL
    M4AYN0
    Conserved Domains (1) summary
    cd14694
    Location:87 → 146
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain

  3. XM_023349514.1 → XP_023205282.1  uncharacterized protein LOC102221048 isoform X1

    Conserved Domains (1) summary
    cd14694
    Location:103 → 162
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
Nucleotide Protein Strain
Heading Accession and Version

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