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alx4 ALX homeobox 4 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102217741, updated on 22-Oct-2023
Gene symbol
alx4
Gene description
ALX homeobox 4
See related
Ensembl:ENSXMAG00000007283
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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See alx4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 2 NC_036444.1 (6096800..6129888, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372184.1 (5240545..5272945, complement)

Chromosome 2 - NC_036444.1Genomic Context describing neighboring genes Neighboring gene CD82 molecule b Neighboring gene tetraspanin 18b Neighboring gene cell cycle associated protein 1b Neighboring gene LIM domain only 2 (rhombotin-like 1)

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
homeobox protein aristaless-like 4

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036444.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    6096800..6129888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005795828.2 → XP_005795885.1  homeobox protein aristaless-like 4

    UniProtKB/TrEMBL
    M3ZYK6
    Related
    ENSXMAP00000007300.1, ENSXMAT00000007308.2
    Conserved Domains (2) summary
    pfam00046
    Location:172 → 224
    Homeobox; Homeobox domain
    pfam03826
    Location:338 → 355
    OAR; OAR domain
Nucleotide Protein Strain
Heading Accession and Version

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