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prpf8 pre-mRNA processing factor 8 [ Pundamilia nyererei ]

Gene ID: 102215482, updated on 16-Jun-2026
Gene symbol
prpf8
Gene description
pre-mRNA processing factor 8
See related
Ensembl:ENSPNYG00000016356
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
all
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Try the new Transcripts and proteins table
See prpf8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2025_06 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187404.1 (6197970..6212908, complement)

NW_005187404.1Genomic Context describing neighboring genes Neighboring gene scavenger receptor class F, member 1 Neighboring gene Rab interacting lysosomal protein Neighboring gene arsenite methyltransferase Neighboring gene apoptosis inducing factor mitochondria associated 4

Genomic Sequence:
NW_005187404 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U1 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U2 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U5 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA intronic binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal tri-snRNP complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
pre-mRNA-processing-splicing factor 8

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RefSeqs of Annotated Genomes: GCF_000239375.1-RS_2025_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187404.1 Reference PunNye1.0

    Range
    6197970..6212908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005720792.1 → XP_005720849.1  pre-mRNA-processing-splicing factor 8

    See identical proteins and their annotated locations for XP_005720849.1

    UniProtKB/TrEMBL
    A0A9Y3QT06
    Related
    ENSPNYP00000021743.1, ENSPNYT00000022273.1
    Conserved Domains (8) summary
    cd08056
    Location:2082 → 2332
    MPN_PRP8; Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8
    COG5178
    Location:27 → 2350
    PRP8; U5 snRNP spliceosome subunit [RNA processing and modification]
    cd13838
    Location:1781 → 2031
    RNase_H_like_Prp8_IV; Ribonuclease-like Prp8 domain IV core
    pfam08082
    Location:73 → 223
    PRO8NT; PRO8NT (NUC069), PrP8 N-terminal domain
    pfam08083
    Location:411 → 811
    PROCN; PROCN (NUC071) domain
    pfam10596
    Location:1457 → 1615
    U6-snRNA_bdg; U6-snRNA interacting domain of PrP8
    pfam10597
    Location:1225 → 1357
    U5_2-snRNA_bdg; U5-snRNA binding site 2 of PrP8
    pfam10598
    Location:1001 → 1092
    RRM_4; RNA recognition motif of the spliceosomal PrP8
Nucleotide Protein
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