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FUBP1 far upstream element binding protein 1 [ Capra hircus (goat) ]

Gene ID: 102176843, updated on 2-Oct-2018

Summary

Gene symbol
FUBP1
Gene description
far upstream element binding protein 1
See related
Ensembl:ENSCHIG00000013418
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs

Genomic context

See FUBP1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
25
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 3 NC_030810.1 (54456075..54490896, complement)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 3 NC_022295.1 (63331879..63366705)

Chromosome 3 - NC_030810.1Genomic Context describing neighboring genes Neighboring gene mitoguardin 1 Neighboring gene 40S ribosomal protein S11-like Neighboring gene nexilin F-actin binding protein Neighboring gene uncharacterized LOC108635570 Neighboring gene DnaJ heat shock protein family (Hsp40) member B4

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
far upstream element-binding protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030810.1 Reference ASM170441v1 Primary Assembly

    Range
    54456075..54490896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005678220.3XP_005678277.1  far upstream element-binding protein 1 isoform X17

    See identical proteins and their annotated locations for XP_005678277.1

    Conserved Domains (3) summary
    cd00105
    Location:277338
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:101165
    KH_1; KH domain
    pfam09005
    Location:601621
    DUF1897; Domain of unknown function (DUF1897)
  2. XM_013962710.2XP_013818164.1  far upstream element-binding protein 1 isoform X11

    Conserved Domains (2) summary
    pfam00013
    Location:123187
    KH_1; KH domain
    pfam09005
    Location:623643
    DUF1897; Domain of unknown function (DUF1897)
  3. XM_013962709.2XP_013818163.1  far upstream element-binding protein 1 isoform X6

    Conserved Domains (2) summary
    pfam00013
    Location:123187
    KH_1; KH domain
    pfam09005
    Location:646666
    DUF1897; Domain of unknown function (DUF1897)
  4. XM_005678207.3XP_005678264.1  far upstream element-binding protein 1 isoform X2

    See identical proteins and their annotated locations for XP_005678264.1

    Conserved Domains (2) summary
    pfam00013
    Location:123187
    KH_1; KH domain
    pfam09005
    Location:646666
    DUF1897; Domain of unknown function (DUF1897)
  5. XM_005678221.3XP_005678278.1  far upstream element-binding protein 1 isoform X18

    See identical proteins and their annotated locations for XP_005678278.1

    Related
    ENSCHIP00000011188.1, ENSCHIT00000018975.1
    Conserved Domains (3) summary
    cd00105
    Location:278339
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:102166
    KH_1; KH domain
    pfam09005
    Location:602622
    DUF1897; Domain of unknown function (DUF1897)
  6. XM_005678216.3XP_005678273.1  far upstream element-binding protein 1 isoform X13

    See identical proteins and their annotated locations for XP_005678273.1

    Conserved Domains (2) summary
    pfam00013
    Location:123187
    KH_1; KH domain
    pfam09005
    Location:623643
    DUF1897; Domain of unknown function (DUF1897)
  7. XM_005678222.2XP_005678279.1  far upstream element-binding protein 1 isoform X19

    See identical proteins and their annotated locations for XP_005678279.1

    Conserved Domains (2) summary
    pfam00013
    Location:101165
    KH_1; KH domain
    pfam09005
    Location:601621
    DUF1897; Domain of unknown function (DUF1897)
  8. XM_013962711.2XP_013818165.1  far upstream element-binding protein 1 isoform X12

    Conserved Domains (2) summary
    pfam00013
    Location:123187
    KH_1; KH domain
    pfam09005
    Location:626646
    DUF1897; Domain of unknown function (DUF1897)
  9. XM_005678210.3XP_005678267.1  far upstream element-binding protein 1 isoform X5

    See identical proteins and their annotated locations for XP_005678267.1

    Related
    ENSCHIP00000011205.1, ENSCHIT00000018992.1
    Conserved Domains (2) summary
    pfam00013
    Location:123187
    KH_1; KH domain
    pfam09005
    Location:646666
    DUF1897; Domain of unknown function (DUF1897)
  10. XM_005678219.3XP_005678276.1  far upstream element-binding protein 1 isoform X16

    Conserved Domains (2) summary
    cd00105
    Location:101163
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:601621
    DUF1897; Domain of unknown function (DUF1897)
  11. XM_005678218.3XP_005678275.1  far upstream element-binding protein 1 isoform X15

    See identical proteins and their annotated locations for XP_005678275.1

    Related
    ENSCHIP00000011224.1, ENSCHIT00000019012.1
    Conserved Domains (2) summary
    cd00105
    Location:102164
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:602622
    DUF1897; Domain of unknown function (DUF1897)
  12. XM_005678214.3XP_005678271.1  far upstream element-binding protein 1 isoform X10

    Conserved Domains (2) summary
    cd00105
    Location:123185
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:623643
    DUF1897; Domain of unknown function (DUF1897)
  13. XM_005678208.3XP_005678265.1  far upstream element-binding protein 1 isoform X3

    Conserved Domains (2) summary
    cd00105
    Location:122184
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:645665
    DUF1897; Domain of unknown function (DUF1897)
  14. XM_005678217.3XP_005678274.1  far upstream element-binding protein 1 isoform X14

    Conserved Domains (2) summary
    cd00105
    Location:101163
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:604624
    DUF1897; Domain of unknown function (DUF1897)
  15. XM_005678213.3XP_005678270.1  far upstream element-binding protein 1 isoform X9

    Conserved Domains (2) summary
    cd00105
    Location:101163
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:624644
    DUF1897; Domain of unknown function (DUF1897)
  16. XM_005678212.3XP_005678269.1  far upstream element-binding protein 1 isoform X8

    Related
    ENSCHIP00000011143.1, ENSCHIT00000018929.1
    Conserved Domains (2) summary
    cd00105
    Location:102164
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:625645
    DUF1897; Domain of unknown function (DUF1897)
  17. XM_005678209.3XP_005678266.1  far upstream element-binding protein 1 isoform X4

    Conserved Domains (2) summary
    cd00105
    Location:123185
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:643663
    DUF1897; Domain of unknown function (DUF1897)
  18. XM_005678211.3XP_005678268.1  far upstream element-binding protein 1 isoform X7

    Conserved Domains (2) summary
    cd00105
    Location:123185
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:626646
    DUF1897; Domain of unknown function (DUF1897)
  19. XM_005678206.3XP_005678263.1  far upstream element-binding protein 1 isoform X1

    Conserved Domains (2) summary
    cd00105
    Location:123185
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:646666
    DUF1897; Domain of unknown function (DUF1897)

RNA

  1. XR_309901.3 RNA Sequence

  2. XR_309900.3 RNA Sequence

  3. XR_001295499.2 RNA Sequence

  4. XR_001295498.2 RNA Sequence

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