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GPC6 glypican 6 [ Sus scrofa (pig) ]

Gene ID: 102159116, updated on 10-Mar-2024

Summary

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Gene symbol
GPC6
Gene description
glypican 6
See related
Ensembl:ENSSSCG00000009489
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 7.3), subcutaneous adipose (RPKM 3.3) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 11 NC_010453.5 (62436143..63560908)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003613214.1 (6072..74391, complement)

Chromosome 11 - NC_010453.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106505326 Neighboring gene glypican 5 Neighboring gene cytochrome c pseudogene Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene dopachrome tautomerase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010453.5 Reference Sscrofa11.1 Primary Assembly

    Range
    62436143..63560908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021065371.1 → XP_020921030.1  glypican-6 isoform X1

    UniProtKB/TrEMBL
    A0A8D1P9X7
    Conserved Domains (1) summary
    pfam01153
    Location:22 → 560
    Glypican

  2. XM_021065372.1 → XP_020921031.1  glypican-6 isoform X2

    UniProtKB/TrEMBL
    A0A287AJK2, A0A287BPI9, A0A480K0L3, A0A4X1V1P1, A0A8D1P9X7
    Related
    ENSSSCP00000058087.3, ENSSSCT00000058853.3
    Conserved Domains (1) summary
    pfam01153
    Location:22 → 550
    Glypican
Nucleotide Protein
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