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LIG4 DNA ligase 4 [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102110873, updated on 10-Mar-2024

Summary

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Gene symbol
LIG4
Gene description
DNA ligase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Pseudopodoces
Orthologs
human mouse all
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Genomic context

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See LIG4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087554.1 (50249445..50253547, complement)

NW_005087554.1Genomic Context describing neighboring genes Neighboring gene arginine and glutamate rich 1 Neighboring gene NALCN channel auxiliary factor 1 Neighboring gene TNF superfamily member 13b Neighboring gene abhydrolase domain containing 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005087554.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA ligation involved in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immunoglobulin V(D)J recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA gap filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA ligase IV complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of DNA-dependent protein kinase-DNA ligase 4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA ligase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087554.1 Reference PseHum1.0 Primary Assembly

    Range
    50249445..50253547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005516487.2 → XP_005516544.1  DNA ligase 4

    Conserved Domains (6) summary
    cd07968
    Location:464 → 600
    OBF_DNA_ligase_IV; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit
    cd07903
    Location:240 → 461
    Adenylation_DNA_ligase_IV; Adenylation domain of DNA Ligase IV
    TIGR00574
    Location:86 → 607
    dnl1; DNA ligase I, ATP-dependent (dnl1)
    pfam00533
    Location:659 → 735
    BRCT; BRCA1 C Terminus (BRCT) domain
    pfam04675
    Location:20 → 208
    DNA_ligase_A_N; DNA ligase N terminus
    pfam11411
    Location:755 → 788
    DNA_ligase_IV; DNA ligase IV

  2. XM_014252751.1 → XP_014108226.1  DNA ligase 4

    Conserved Domains (6) summary
    cd07968
    Location:464 → 600
    OBF_DNA_ligase_IV; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit
    cd07903
    Location:240 → 461
    Adenylation_DNA_ligase_IV; Adenylation domain of DNA Ligase IV
    TIGR00574
    Location:86 → 607
    dnl1; DNA ligase I, ATP-dependent (dnl1)
    pfam00533
    Location:659 → 735
    BRCT; BRCA1 C Terminus (BRCT) domain
    pfam04675
    Location:20 → 208
    DNA_ligase_A_N; DNA ligase N terminus
    pfam11411
    Location:755 → 788
    DNA_ligase_IV; DNA ligase IV
Nucleotide Protein
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