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THUMPD2 THUMP domain containing 2 [ Pseudopodoces humilis (Tibetan ground-tit) ]

Gene ID: 102104130, updated on 14-Sep-2018

Summary

Gene symbol
THUMPD2
Gene description
THUMP domain containing 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudopodoces humilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Pseudopodoces
Orthologs

Genomic context

See THUMPD2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087710.1 (3991..20897, complement)

NW_005087710.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 15 Neighboring gene family with sequence similarity 83 member H Neighboring gene scribbled planar cell polarity protein

Genomic regions, transcripts, and products

Genomic Sequence:
NW_005087710.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
THUMP domain-containing protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PseHum1.0 Primary Assembly

Genomic

  1. NW_005087710.1 Reference PseHum1.0 Primary Assembly

    Range
    3991..20897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014261630.1XP_014117105.1  THUMP domain-containing protein 2 isoform X3

    Conserved Domains (2) summary
    smart00981
    Location:234273
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:283421
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  2. XM_014261631.1XP_014117106.1  THUMP domain-containing protein 2 isoform X4

    Conserved Domains (2) summary
    smart00981
    Location:197255
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:265403
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  3. XM_014261629.1XP_014117104.1  THUMP domain-containing protein 2 isoform X2

    Conserved Domains (2) summary
    cd11715
    Location:967
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    cl17173
    Location:313445
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  4. XM_014261628.1XP_014117103.1  THUMP domain-containing protein 2 isoform X1

    Conserved Domains (3) summary
    cd11715
    Location:967
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    smart00981
    Location:305344
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    cl17173
    Location:354492
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
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