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GPC5 glypican 5 [ Columba livia (rock pigeon) ]

Gene ID: 102092904, updated on 10-Mar-2024

Summary

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Gene symbol
GPC5
Gene description
glypican 5
Locus tag
A306_04048
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba
Also known as
Glypican-5
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973373.1 (2147671..2813776, complement)

NW_004973373.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110361092 Neighboring gene uncharacterized LOC110361098 Neighboring gene uncharacterized LOC110361095 Neighboring gene uncharacterized LOC110361096 Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene uncharacterized LOC110361099 Neighboring gene uncharacterized LOC110361097

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004973373 Unplaced Scaffold Reference Cliv_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Columba livia Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cliv_1.0 Primary Assembly

Genomic

  1. NW_004973373.1 Reference Cliv_1.0 Primary Assembly

    Range
    2147671..2813776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021292093.1 → XP_021147768.1  glypican-5 isoform X2

    Conserved Domains (1) summary
    pfam01153
    Location:14 → 568
    Glypican

  2. XM_021292092.1 → XP_021147767.1  glypican-5 isoform X1

    Conserved Domains (1) summary
    pfam01153
    Location:1 → 498
    Glypican
Nucleotide Protein
Heading Accession and Version

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