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CYLD CYLD lysine 63 deubiquitinase [ Columba livia (rock pigeon) ]

Gene ID: 102091076, updated on 18-Sep-2018

Summary

Gene symbol
CYLD
Gene description
CYLD lysine 63 deubiquitinase
Locus tag
A306_01625
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba
Orthologs

Genomic context

See CYLD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973333.1 (1901904..1928723)

NW_004973333.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110360445 Neighboring gene sorting nexin 20 Neighboring gene spalt like transcription factor 1 Neighboring gene uncharacterized LOC110360433

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004973333 Unplaced Scaffold Reference Cliv_1.0 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • RIG-I-like receptor signaling pathway, organism-specific biosystem (from KEGG)
    RIG-I-like receptor signaling pathway, organism-specific biosystemSpecific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular ...
  • RIG-I-like receptor signaling pathway, conserved biosystem (from KEGG)
    RIG-I-like receptor signaling pathway, conserved biosystemSpecific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular ...

General protein information

Preferred Names
LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase CYLD
Names
putative ubiquitin carboxyl-terminal hydrolase CYLD

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Columba livia Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cliv_1.0 Primary Assembly

Genomic

  1. NW_004973333.1 Reference Cliv_1.0 Primary Assembly

    Range
    1901904..1928723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005516034.2XP_005516091.1  LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase CYLD

    Conserved Domains (3) summary
    smart01052
    Location:469536
    CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
    cd02670
    Location:589946
    Peptidase_C19N; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam16607
    Location:303467
    CYLD_phos_site; Phosphorylation region of CYLD, unstructured
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