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zbtb3 zinc finger and BTB domain containing 3 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 102081498, updated on 13-Oct-2018

Summary

Gene symbol
zbtb3
Gene description
zinc finger and BTB domain containing 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in testis (RPKM 8.5), blood (RPKM 1.7) and 3 other tissues See more
Orthologs

Genomic context

See zbtb3 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
4
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG2 NC_031966.2 (20702277..20706113, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG2 NC_031966.1 (18785460..18788832, complement)

Linkage Group LG2 - NC_031966.2Genomic Context describing neighboring genes Neighboring gene seipin Neighboring gene ribonuclease H2 subunit C Neighboring gene tRNA phosphotransferase 1 Neighboring gene fermitin family member 3 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transfer RNA tryptophan (anticodon CCA)

Genomic regions, transcripts, and products

Expression

  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
zinc finger and BTB domain-containing protein 3

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031966.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    20702277..20706113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025911398.1XP_025767183.1  zinc finger and BTB domain-containing protein 3 isoform X1

    Conserved Domains (3) summary
    sd00019
    Location:585605
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:44147
    BTB; BTB/POZ domain
    pfam13465
    Location:598622
    zf-H2C2_2; Zinc-finger double domain
  2. XM_005467535.4XP_005467592.1  zinc finger and BTB domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005467592.1

    Conserved Domains (3) summary
    sd00019
    Location:585605
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:44147
    BTB; BTB/POZ domain
    pfam13465
    Location:598622
    zf-H2C2_2; Zinc-finger double domain
  3. XM_019365304.2XP_019220849.1  zinc finger and BTB domain-containing protein 3 isoform X2

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