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USPL1 ubiquitin specific peptidase like 1 [ Homo sapiens (human) ]

Gene ID: 10208, updated on 12-Oct-2019

Summary

Official Symbol
USPL1provided by HGNC
Official Full Name
ubiquitin specific peptidase like 1provided by HGNC
Primary source
HGNC:HGNC:20294
See related
Ensembl:ENSG00000132952 MIM:617470
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C13orf22; D13S106E; bA121O19.1
Expression
Ubiquitous expression in testis (RPKM 10.5), bone marrow (RPKM 8.9) and 25 other tissues See more
Orthologs

Genomic context

See USPL1 in Genome Data Viewer
Location:
13q12.3
Exon count:
10
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (30617859..30660766)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (31191830..31233687)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene high mobility group box 1 Neighboring gene microfibril associated protein 1 pseudogene 1 Neighboring gene PTPN2 pseudogene 2 Neighboring gene tRNA-Asn (anticodon GTT) 2-4 Neighboring gene arachidonate 5-lipoxygenase activating protein

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ32952, DKFZp781K2286

Gene Ontology Provided by GOA

Function Evidence Code Pubs
SUMO binding IDA
Inferred from Direct Assay
more info
PubMed 
SUMO-specific isopeptidase activity IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
NOT ubiquitin binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
Cajal body organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein desumoylation IDA
Inferred from Direct Assay
more info
PubMed 
snRNA transcription IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
Cajal body IDA
Inferred from Direct Assay
more info
PubMed 
extracellular space HDA PubMed 

General protein information

Preferred Names
SUMO-specific isopeptidase USPL1
Names
USP-like 1
highly charged protein
ubiquitin-specific peptidase-like protein 1
NP_001308461.1
NP_001308462.1
NP_001308463.1
NP_005791.3
XP_006719814.1
XP_016875803.1
XP_016875804.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001321532.2NP_001308461.1  SUMO-specific isopeptidase USPL1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK289826, AL138681, BC036027, CR627370, DB288223, X59131
    UniProtKB/Swiss-Prot
    Q5W0Q7
    UniProtKB/TrEMBL
    A8K1B1
    Conserved Domains (2) summary
    pfam15499
    Location:47317
    Peptidase_C98; Ubiquitin-specific peptidase-like, SUMO isopeptidase
    pfam15509
    Location:391909
    DUF4650; Domain of unknown function (DUF4650)
  2. NM_001321533.2NP_001308462.1  SUMO-specific isopeptidase USPL1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL138681, CR627370, DB288223
    Consensus CDS
    CCDS81760.1
    UniProtKB/Swiss-Prot
    Q5W0Q7
    Related
    ENSP00000480656.1, ENST00000614860.1
    Conserved Domains (2) summary
    pfam15499
    Location:1169
    Peptidase_C98; Ubiquitin-specific peptidase-like, SUMO isopeptidase
    pfam15509
    Location:243761
    DUF4650; Domain of unknown function (DUF4650)
  3. NM_001321534.2NP_001308463.1  SUMO-specific isopeptidase USPL1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AK057514, AL138681, CR627370
    Consensus CDS
    CCDS81760.1
    UniProtKB/Swiss-Prot
    Q5W0Q7
    UniProtKB/TrEMBL
    B3KQ64
    Conserved Domains (2) summary
    pfam15499
    Location:1169
    Peptidase_C98; Ubiquitin-specific peptidase-like, SUMO isopeptidase
    pfam15509
    Location:243761
    DUF4650; Domain of unknown function (DUF4650)
  4. NM_005800.5NP_005791.3  SUMO-specific isopeptidase USPL1 isoform 1

    See identical proteins and their annotated locations for NP_005791.3

    Status: VALIDATED

    Source sequence(s)
    AK289826, AL138681, BC036027, BI752017, X59131
    Consensus CDS
    CCDS9336.1
    UniProtKB/Swiss-Prot
    Q5W0Q7
    UniProtKB/TrEMBL
    A8K1B1
    Related
    ENSP00000255304.4, ENST00000255304.9
    Conserved Domains (2) summary
    pfam15499
    Location:228498
    Peptidase_C98; Ubiquitin-specific peptidase-like, SUMO isopeptidase
    pfam15509
    Location:5721090
    DUF4650; Domain of unknown function (DUF4650)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    30617859..30660766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017020315.1XP_016875804.1  SUMO-specific isopeptidase USPL1 isoform X3

  2. XM_017020314.2XP_016875803.1  SUMO-specific isopeptidase USPL1 isoform X2

  3. XM_006719751.4XP_006719814.1  SUMO-specific isopeptidase USPL1 isoform X1

    Conserved Domains (2) summary
    pfam15499
    Location:222492
    Peptidase_C98; Ubiquitin-specific peptidase-like, SUMO isopeptidase
    pfam15509
    Location:5661084
    DUF4650; Domain of unknown function (DUF4650)
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