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TYRP1 tyrosinase related protein 1 [ Falco cherrug (Saker falcon) ]

Gene ID: 102052493, updated on 3-Aug-2024
Gene symbol
TYRP1
Gene description
tyrosinase related protein 1
See related
EnsemblRapid:ENSFCHG00000014646
Gene type
protein coding
RefSeq status
MODEL
Organism
Falco cherrug
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Falconiformes; Falconidae; Falco
Orthologs
all
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See TYRP1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_04 current bFalChe1.pri (GCF_023634085.1) Z NC_073720.1 (34117710..34127228)
102 previous assembly F_cherrug_v1.0 (GCF_000337975.1) Unplaced Scaffold NW_004994774.1 (3484228..3493744, complement)

Chromosome Z - NC_073720.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129734764 Neighboring gene uncharacterized LOC129734786 Neighboring gene uncharacterized LOC114016339 Neighboring gene leucine rich adaptor protein 1 like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Involvement of tyrosinase-related protein 1 gene in the light brown plumage phenotype of Falco cherrug. Cortimiglia C, et al. Anim Genet, 2017 Feb. PMID 27611661
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. sex-linked inheritance of TYRP1 gene determining plumage color
    Title: Involvement of tyrosinase-related protein 1 gene in the light brown plumage phenotype of Falco cherrug.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in melanocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in melanosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in melanosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
5,6-dihydroxyindole-2-carboxylic acid oxidase

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RefSeqs of Annotated Genomes: GCF_023634085.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bFalChe1.pri Primary Assembly

Genomic

  1. NC_073720.1 Reference bFalChe1.pri Primary Assembly

    Range
    34117710..34127228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005441033.4 → XP_005441090.1  5,6-dihydroxyindole-2-carboxylic acid oxidase

    Related
    ENSFCHP00000024355.1
    Conserved Domains (1) summary
    pfam00264
    Location:182 → 416
    Tyrosinase; Common central domain of tyrosinase
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases