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BCO2 beta-carotene oxygenase 2 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102041586, updated on 3-Aug-2024
Gene symbol
BCO2
Gene description
beta-carotene oxygenase 2
See related
Ensembl:ENSGFOG00000012569
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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See BCO2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054447.1 (136807..151940)

NW_005054447.1Genomic Context describing neighboring genes Neighboring gene interleukin 18 Neighboring gene testis expressed 12 Neighboring gene 6-pyruvoyltetrahydropterin synthase Neighboring gene uncharacterized LOC115948613

Genomic Sequence:
NW_005054447 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-carotene 15,15'-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
beta,beta-carotene 9',10'-oxygenase

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054447.1 Reference GeoFor_1.0

    Range
    136807..151940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031062403.1 → XP_030918263.1  beta,beta-carotene 9',10'-oxygenase isoform X1

    UniProtKB/TrEMBL
    A0A8N5I1Z5
    Conserved Domains (1) summary
    pfam03055
    Location:101 → 610
    RPE65; Retinal pigment epithelial membrane protein

  2. XM_005427519.2 → XP_005427576.1  beta,beta-carotene 9',10'-oxygenase isoform X2

    UniProtKB/TrEMBL
    A0A6I9HPK3
    Related
    ENSGFOP00000018583.1, ENSGFOT00000019184.1
    Conserved Domains (1) summary
    pfam03055
    Location:70 → 579
    RPE65; Retinal pigment epithelial membrane protein
Nucleotide Protein
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