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TRNAG-UCC transfer RNA glycine (anticodon UCC) [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102031250, updated on 14-Sep-2018

Summary

Gene symbol
TRNAG-UCC
Gene description
transfer RNA glycine (anticodon UCC)
Gene type
tRNA
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Summary
This record serves to anchor the annotations of this class of tRNAs at multiple locations on the medium ground-finch genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 90

Genomic context

See TRNAG-UCC in Genome Data Viewer
Location:
chromosome: Un
Annotation release Status Assembly Chr Location
101 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054303.1 (13312786..13312857, complement)
101 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054398.1 (1540933..1541004)
101 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054511.1 (709566..709637)
101 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054549.1 (152719..152790)

NW_005054549.1Genomic Context describing neighboring genes Neighboring gene myeloid derived growth factor Neighboring gene dipeptidyl peptidase 9 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene fem-1 homolog A

NW_005054511.1Genomic Context describing neighboring genes Neighboring gene gap junction protein delta 4 Neighboring gene frizzled class receptor 8

NW_005054398.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S27 like Neighboring gene RAB8B, member RAS oncogene family Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene Src homology 2 domain containing F

NW_005054303.1Genomic Context describing neighboring genes Neighboring gene pellino E3 ubiquitin protein ligase family member 2 Neighboring gene kinectin 1 Neighboring gene TATA-box binding protein like 2 Neighboring gene autophagy related 14 Neighboring gene F-box protein 34

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054303.1 Reference GeoFor_1.0

    Range
    13312786..13312857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GeoFor_1.0

Genomic

  1. NW_005054398.1 Reference GeoFor_1.0

    Range
    1540933..1541004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GeoFor_1.0

Genomic

  1. NW_005054511.1 Reference GeoFor_1.0

    Range
    709566..709637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GeoFor_1.0

Genomic

  1. NW_005054549.1 Reference GeoFor_1.0

    Range
    152719..152790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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