U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pcbp4 poly(rC) binding protein 4 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102024048, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Pcbp4
Gene description
poly(rC) binding protein 4
See related
Ensembl:ENSCLAG00000008356
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955532.1 (3604720..3615112, complement)

NW_004955532.1Genomic Context describing neighboring genes Neighboring gene poly(ADP-ribose) polymerase family member 3 Neighboring gene G protein-coupled receptor 62 Neighboring gene abhydrolase domain containing 14A Neighboring gene abhydrolase domain containing 14B Neighboring gene aminoacylase 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004955532.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
poly(rC)-binding protein 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955532.1 Reference ChiLan1.0 Primary Assembly

    Range
    3604720..3615112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005410337.1 → XP_005410394.1  poly(rC)-binding protein 4 isoform X2

    See identical proteins and their annotated locations for XP_005410394.1

    UniProtKB/TrEMBL
    A0A8C2V9B7, A0A8C2YNQ6
    Related
    ENSCLAP00000012120.1, ENSCLAT00000012261.1
    Conserved Domains (2) summary
    cd00105
    Location:243 → 305
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:103 → 167
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  2. XM_005410336.2 → XP_005410393.1  poly(rC)-binding protein 4 isoform X2

    See identical proteins and their annotated locations for XP_005410393.1

    UniProtKB/TrEMBL
    A0A8C2V9B7, A0A8C2YNQ6
    Conserved Domains (2) summary
    cd00105
    Location:243 → 305
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:103 → 167
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  3. XM_005410339.2 → XP_005410396.1  poly(rC)-binding protein 4 isoform X3

    Conserved Domains (2) summary
    cd00105
    Location:273 → 335
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:133 → 197
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

  4. XM_005410335.2 → XP_005410392.1  poly(rC)-binding protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C2YNQ6
    Conserved Domains (2) summary
    cd00105
    Location:273 → 335
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd02396
    Location:133 → 197
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.