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Dsc3 desmocollin 3 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102023417, updated on 10-Mar-2024

Summary

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Gene symbol
Dsc3
Gene description
desmocollin 3
See related
Ensembl:ENSCLAG00000016462
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Dsc3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955402.1 (18401065..18439827, complement)

NW_004955402.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 2U1-like Neighboring gene zinc finger CCCH domain-containing protein 15 pseudogene Neighboring gene desmocollin 2 Neighboring gene desmocollin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955402.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables gamma-catenin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in desmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
desmocollin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955402.1 Reference ChiLan1.0 Primary Assembly

    Range
    18401065..18439827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013506482.1 → XP_013361936.1  desmocollin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C2YUD0
    Related
    ENSCLAP00000023984.1, ENSCLAT00000024213.1
    Conserved Domains (4) summary
    cd11304
    Location:248 → 352
    Cadherin_repeat; Cadherin tandem repeat domain
    smart01055
    Location:29 → 112
    Cadherin_pro; Cadherin prodomain like
    pfam00028
    Location:141 → 235
    Cadherin; Cadherin domain
    pfam01049
    Location:844 → 892
    Cadherin_C; Cadherin cytoplasmic region

  2. XM_013506510.1 → XP_013361964.1  desmocollin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8C2YUD0
    Conserved Domains (3) summary
    cd11304
    Location:248 → 352
    Cadherin_repeat; Cadherin tandem repeat domain
    smart01055
    Location:29 → 112
    Cadherin_pro; Cadherin prodomain like
    pfam00028
    Location:141 → 235
    Cadherin; Cadherin domain
Nucleotide Protein
Heading Accession and Version

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