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Commd1 copper metabolism domain containing 1 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102020137, updated on 10-Mar-2024

Summary

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Gene symbol
Commd1
Gene description
copper metabolism domain containing 1
See related
Ensembl:ENSCLAG00000013262
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955424.1 (21962837..22067745, complement)

NW_004955424.1Genomic Context describing neighboring genes Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 Neighboring gene uncharacterized LOC102029416 Neighboring gene elongation factor 1-beta pseudogene Neighboring gene uncharacterized LOC106148590 Neighboring gene U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like Neighboring gene chaperonin containing TCP1 subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955424.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in copper ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of protein localization to cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
COMM domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955424.1 Reference ChiLan1.0 Primary Assembly

    Range
    21962837..22067745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013514647.1 → XP_013370101.1  COMM domain-containing protein 1

    Related
    ENSCLAP00000019349.1, ENSCLAT00000019538.1
    Conserved Domains (1) summary
    cd04749
    Location:11 → 194
    Commd1_MURR1; COMM_Domain containing protein 1, also called Murr1. Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. The COMM Domain is found at the C-terminus of a ...
Nucleotide Protein
Heading Accession and Version

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