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Zbtb20 zinc finger and BTB domain containing 20 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102010287, updated on 10-Mar-2024

Summary

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Gene symbol
Zbtb20
Gene description
zinc finger and BTB domain containing 20
See related
Ensembl:ENSCLAG00000011625
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955427.1 (14409700..15231495, complement)

NW_004955427.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102009084 Neighboring gene dopamine receptor D3 Neighboring gene T cell immunoreceptor with Ig and ITIM domains Neighboring gene uncharacterized LOC106148704 Neighboring gene growth associated protein 43 Neighboring gene limbic system associated membrane protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955427.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955427.1 Reference ChiLan1.0 Primary Assembly

    Range
    14409700..15231495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005386415.2 → XP_005386472.1  zinc finger and BTB domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_005386472.1

    UniProtKB/TrEMBL
    A0A8C2VMH1
    Conserved Domains (5) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:647 → 672
    zf-H2C2_2; Zinc-finger double domain

  2. XM_013515065.1 → XP_013370519.1  zinc finger and BTB domain-containing protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8C2VMH1
    Conserved Domains (5) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:647 → 672
    zf-H2C2_2; Zinc-finger double domain

  3. XM_013515064.1 → XP_013370518.1  zinc finger and BTB domain-containing protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8C2VMH1
    Conserved Domains (5) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:647 → 672
    zf-H2C2_2; Zinc-finger double domain

  4. XM_013515067.1 → XP_013370521.1  zinc finger and BTB domain-containing protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8C2VMH1
    Conserved Domains (5) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:647 → 672
    zf-H2C2_2; Zinc-finger double domain

  5. XM_005386414.2 → XP_005386471.1  zinc finger and BTB domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_005386471.1

    UniProtKB/TrEMBL
    A0A8C2VMH1
    Conserved Domains (5) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:647 → 672
    zf-H2C2_2; Zinc-finger double domain

  6. XM_005386420.2 → XP_005386477.1  zinc finger and BTB domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_005386477.1

    UniProtKB/TrEMBL
    A0A8C2VMH1
    Conserved Domains (5) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:647 → 672
    zf-H2C2_2; Zinc-finger double domain

  7. XM_005386421.2 → XP_005386478.1  zinc finger and BTB domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_005386478.1

    UniProtKB/TrEMBL
    A0A8C2VMH1
    Conserved Domains (5) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:647 → 672
    zf-H2C2_2; Zinc-finger double domain

  8. XM_005386418.2 → XP_005386475.1  zinc finger and BTB domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_005386475.1

    UniProtKB/TrEMBL
    A0A8C2VMH1
    Conserved Domains (5) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:647 → 672
    zf-H2C2_2; Zinc-finger double domain

  9. XM_005386417.2 → XP_005386474.1  zinc finger and BTB domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_005386474.1

    UniProtKB/TrEMBL
    A0A8C2VMH1
    Conserved Domains (5) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:647 → 672
    zf-H2C2_2; Zinc-finger double domain

  10. XM_005386416.2 → XP_005386473.1  zinc finger and BTB domain-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_005386473.1

    UniProtKB/TrEMBL
    A0A8C2VMH1
    Conserved Domains (5) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:647 → 672
    zf-H2C2_2; Zinc-finger double domain

  11. XM_013515066.1 → XP_013370520.1  zinc finger and BTB domain-containing protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8C2VMH1
    Related
    ENSCLAP00000016940.1, ENSCLAT00000017106.1
    Conserved Domains (5) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:579 → 599
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:633 → 655
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:647 → 672
    zf-H2C2_2; Zinc-finger double domain

  12. XM_013515068.1 → XP_013370522.1  zinc finger and BTB domain-containing protein 20 isoform X2

    UniProtKB/TrEMBL
    A0A8C2VPH3
    Related
    ENSCLAP00000016941.1, ENSCLAT00000017107.1
    Conserved Domains (6) summary
    smart00225
    Location:32 → 123
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:431 → 573
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:506 → 526
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:560 → 582
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:21 → 119
    BTB; BTB/POZ domain
    pfam13465
    Location:574 → 599
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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