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PCAT14 prostate cancer associated transcript 14 [ Homo sapiens (human) ]

Gene ID: 101978785, updated on 13-May-2022

Summary

Official Symbol
PCAT14provided by HGNC
Official Full Name
prostate cancer associated transcript 14provided by HGNC
Primary source
HGNC:HGNC:48977
See related
AllianceGenome:HGNC:48977
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward prostate (RPKM 12.3) See more
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Genomic context

See PCAT14 in Genome Data Viewer
Location:
22q11.23
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (23538102..23547306)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (23985333..23994537)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (23880289..23889493)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2557 Neighboring gene uncharacterized LOC107985580 Neighboring gene endogenous retrovirus group K member 5 Gag polyprotein-like Neighboring gene Sharpr-MPRA regulatory regions 962 and 2236 Neighboring gene uncharacterized LOC105372957 Neighboring gene immunoglobulin lambda like polypeptide 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Other Names

  • prostate cancer associated transcript 14 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109832.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000345

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    23538102..23547306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    23985333..23994537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)