U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Plxnb1 plexin B1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101977186, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Plxnb1
Gene description
plexin B1
See related
EnsemblRapid:ENSSTOG00015017841
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405602.1 (63437337..63468607, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936529.1 (197834..226064, complement)

NW_024405602.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C4orf3 homolog Neighboring gene F-box and WD repeat domain containing 12 Neighboring gene U6 spliceosomal RNA Neighboring gene coiled-coil domain containing 51 Neighboring gene ATR interacting protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of semaphorin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
plexin-B1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405602.1 Reference HiC_Itri_2 Primary Assembly

    Range
    63437337..63468607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040269656.1 → XP_040125590.1  plexin-B1 isoform X1

    UniProtKB/TrEMBL
    I3MJ58
    Related
    ENSSTOP00015022027.1, ENSSTOT00015024039.1
    Conserved Domains (9) summary
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:678 → 835
    PHA03247; large tegument protein UL36; Provisional
    cd01180
    Location:1066 → 1157
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 530
    PSI; Plexin repeat
    pfam08337
    Location:1558 → 2098
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:541 → 627
    TIG_plexin; TIG domain
    pfam18020
    Location:917 → 1016
    TIG_2; TIG domain found in plexin
    cl15674
    Location:1248 → 1372
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:28 → 480
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_013359425.3 → XP_013214879.1  plexin-B1 isoform X1

    UniProtKB/TrEMBL
    I3MJ58
    Conserved Domains (9) summary
    smart00423
    Location:641 → 677
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:678 → 835
    PHA03247; large tegument protein UL36; Provisional
    cd01180
    Location:1066 → 1157
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:481 → 530
    PSI; Plexin repeat
    pfam08337
    Location:1558 → 2098
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:541 → 627
    TIG_plexin; TIG domain
    pfam18020
    Location:917 → 1016
    TIG_2; TIG domain found in plexin
    cl15674
    Location:1248 → 1372
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:28 → 480
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_040269657.1 → XP_040125591.1  plexin-B1 isoform X2

    UniProtKB/TrEMBL
    I3MJ58
    Conserved Domains (6) summary
    cd12793
    Location:1517 → 2089
    RasGAP_plexin_B1; Ras-GTPase Activating Domain of plexin-B1
    smart00423
    Location:482 → 520
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:678 → 835
    PHA03247; large tegument protein UL36; Provisional
    cd01180
    Location:1025 → 1116
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cl15674
    Location:1207 → 1331
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:28 → 480
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_040269658.1 → XP_040125592.1  plexin-B1 isoform X3

    UniProtKB/TrEMBL
    I3MJ58
    Conserved Domains (6) summary
    smart00423
    Location:482 → 520
    PSI; domain found in Plexins, Semaphorins and Integrins
    PHA03247
    Location:678 → 835
    PHA03247; large tegument protein UL36; Provisional
    cd01180
    Location:1066 → 1157
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cl02569
    Location:1558 → 1727
    RasGAP; Ras GTPase Activating Domain
    cl15674
    Location:1248 → 1372
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    cl15693
    Location:28 → 480
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

RNA

  1. XR_005726603.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.