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Plaa phospholipase A2 activating protein [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101976930, updated on 10-Aug-2018

Summary

Gene symbol
Plaa
Gene description
phospholipase A2 activating protein
See related
Ensembl:ENSSTOG00000013249
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs

Genomic context

See Plaa in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936611.1 (2665294..2698372)

NW_004936611.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101975247 Neighboring gene TEK receptor tyrosine kinase Neighboring gene intraflagellar transport 74 Neighboring gene leucine rich repeat containing 19 Neighboring gene caspase activity and apoptosis inhibitor 1 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004936611 Unplaced Scaffold Reference SpeTri2.0

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
phospholipase A-2-activating protein

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SpeTri2.0

Genomic

  1. NW_004936611.1 Reference SpeTri2.0

    Range
    2665294..2698372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013362345.2XP_013217799.1  phospholipase A-2-activating protein isoform X2

    Conserved Domains (6) summary
    COG2319
    Location:8296
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:10297
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam05831
    Location:298352
    GAGE; GAGE protein
    pfam08324
    Location:521756
    PUL; PUL domain
    pfam09070
    Location:346458
    PFU; PFU (PLAA family ubiquitin binding)
    sd00039
    Location:68110
    7WD40; WD40 repeat [structural motif]
  2. XM_005334190.3XP_005334247.1  phospholipase A-2-activating protein isoform X1

    UniProtKB/TrEMBL
    I3MKM5
    Related
    ENSSTOP00000011874.3, ENSSTOT00000013248.3
    Conserved Domains (6) summary
    COG2319
    Location:8296
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:10297
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam05831
    Location:298352
    GAGE; GAGE protein
    pfam08324
    Location:537790
    PUL; PUL domain
    pfam09070
    Location:346458
    PFU; PFU (PLAA family ubiquitin binding)
    sd00039
    Location:68110
    7WD40; WD40 repeat [structural motif]
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