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Psap prosaposin [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101976627, updated on 8-Mar-2024

Summary

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Gene symbol
Psap
Gene description
prosaposin
Locus tag
H1C71_001046
See related
EnsemblRapid:ENSSTOG00015017353
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024407213.1 (58483085..58516521)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936521.1 (6975844..7009460)

NW_024407213.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120885675 Neighboring gene carbohydrate sulfotransferase 3 Neighboring gene cadherin-23-like Neighboring gene cadherin-23-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prosaposin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024407213.1 Reference HiC_Itri_2 Primary Assembly

    Range
    58483085..58516521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005325935.4 → XP_005325992.1  prosaposin isoform X1

    UniProtKB/TrEMBL
    I3M9M9
    Conserved Domains (3) summary
    smart00741
    Location:435 → 510
    SapB; Saposin (B) Domains
    pfam02199
    Location:520 → 552
    SapA; Saposin A-type domain
    cl02494
    Location:21 → 54
    SapA; Saposin A-type domain

  2. XM_005325936.4 → XP_005325993.1  prosaposin isoform X2

    UniProtKB/TrEMBL
    I3M9M9
    Conserved Domains (3) summary
    smart00741
    Location:434 → 509
    SapB; Saposin (B) Domains
    pfam02199
    Location:519 → 551
    SapA; Saposin A-type domain
    cl02494
    Location:21 → 54
    SapA; Saposin A-type domain

  3. XM_005325937.4 → XP_005325994.1  prosaposin isoform X3

    UniProtKB/TrEMBL
    I3M9M9
    Related
    ENSSTOP00015021429.1, ENSSTOT00015023414.1
    Conserved Domains (3) summary
    smart00741
    Location:432 → 507
    SapB; Saposin (B) Domains
    pfam02199
    Location:517 → 549
    SapA; Saposin A-type domain
    cl02494
    Location:21 → 54
    SapA; Saposin A-type domain
Nucleotide Protein
Heading Accession and Version

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