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Ccn4 cellular communication network factor 4 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101976579, updated on 8-Mar-2024

Summary

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Gene symbol
Ccn4
Gene description
cellular communication network factor 4
Locus tag
H1C71_018986
See related
EnsemblRapid:ENSSTOG00015016012
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Also known as
Wisp1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405303.1 (8682581..8708143, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936470.1 (16110492..16134065, complement)

NW_024405303.1Genomic Context describing neighboring genes Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 1 Neighboring gene N-myc downstream regulated 1 Neighboring gene uncharacterized LOC120892694 Neighboring gene thyroglobulin Neighboring gene Src like adaptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCN family member 4
Names
WNT1 inducible signaling pathway protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405303.1 Reference HiC_Itri_2 Primary Assembly

    Range
    8682581..8708143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005316138.2 → XP_005316195.1  CCN family member 4

    UniProtKB/TrEMBL
    I3MY24
    Related
    ENSSTOP00015019638.1, ENSSTOT00015021505.1
    Conserved Domains (3) summary
    smart00214
    Location:122 → 180
    VWC; von Willebrand factor (vWF) type C domain
    pfam00219
    Location:48 → 100
    IGFBP; Insulin-like growth factor binding protein
    pfam19035
    Location:215 → 258
    TSP1_CCN; CCN3 Nov like TSP1 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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