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Cubn cubilin [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101974382, updated on 10-Aug-2018

Summary

Gene symbol
Cubn
Gene description
cubilin
See related
Ensembl:ENSSTOG00000029820
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs

Genomic context

See Cubn in Genome Data Viewer
Location:
chromosome: Un
Exon count:
66
Annotation release Status Assembly Chr Location
102 current SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936520.1 (10140784..10410082)

NW_004936520.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110598186 Neighboring gene tRNA aspartic acid methyltransferase 1 Neighboring gene Ras suppressor protein 1 Neighboring gene complement C1q like 3

Genomic regions, transcripts, and products

Genomic Sequence:
NW_004936520 Unplaced Scaffold Reference SpeTri2.0

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SpeTri2.0

Genomic

  1. NW_004936520.1 Reference SpeTri2.0

    Range
    10140784..10410082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021726681.1XP_021582356.1  cubilin

    Related
    ENSSTOP00000027943.1, ENSSTOT00000037066.1
    Conserved Domains (5) summary
    smart00179
    Location:260301
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:25982709
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00054
    Location:429465
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00431
    Location:13881499
    CUB; CUB domain
    pfam12947
    Location:350384
    EGF_3; EGF domain
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