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Cdh5 cadherin 5 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101966189, updated on 8-Mar-2024

Summary

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Gene symbol
Cdh5
Gene description
cadherin 5
Locus tag
H1C71_040237
See related
EnsemblRapid:ENSSTOG00015005805
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024409349.1 (42814114..42850388, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936475.1 (16738772..16775000)

NW_024409349.1Genomic Context describing neighboring genes Neighboring gene thymidine kinase 2 Neighboring gene brain expressed associated with NEDD4 1 Neighboring gene uncharacterized LOC120888163 Neighboring gene uncharacterized LOC120888100 Neighboring gene uncharacterized LOC120888097

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of establishment of cell polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vasculature development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024409349.1 Reference HiC_Itri_2 Primary Assembly

    Range
    42814114..42850388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005318259.3 → XP_005318316.1  cadherin-5

    UniProtKB/TrEMBL
    I3M7K0
    Related
    ENSSTOP00015007048.1, ENSSTOT00015007774.1
    Conserved Domains (2) summary
    cd11304
    Location:154 → 252
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:626 → 777
    Cadherin_C; Cadherin cytoplasmic region

  2. XM_013366082.2 → XP_013221536.1  cadherin-5

    UniProtKB/TrEMBL
    I3M7K0
    Conserved Domains (2) summary
    cd11304
    Location:154 → 252
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:626 → 777
    Cadherin_C; Cadherin cytoplasmic region
Nucleotide Protein
Heading Accession and Version

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