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Pgk1 phosphoglycerate kinase 1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101961064, updated on 8-Mar-2024

Summary

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Gene symbol
Pgk1
Gene description
phosphoglycerate kinase 1
Locus tag
H1C71_030662
See related
EnsemblRapid:ENSSTOG00015006182
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Pgk1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
11
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) X NC_053502.1 (53965864..53989650)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936547.1 (286267..310062)

Chromosome X - NC_053502.1Genomic Context describing neighboring genes Neighboring gene lysophosphatidic acid receptor 1-like Neighboring gene uncharacterized LOC120889015 Neighboring gene TATA-box binding protein associated factor 9b Neighboring gene TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoglycerate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoglycerate kinase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NC_053502.1 Reference HiC_Itri_2 Primary Assembly

    Range
    53965864..53989650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005328811.2 → XP_005328868.1  phosphoglycerate kinase 1

    UniProtKB/TrEMBL
    I3LZI7
    Related
    ENSSTOP00015007532.1, ENSSTOT00015008302.1
    Conserved Domains (1) summary
    PTZ00005
    Location:3 → 416
    PTZ00005; phosphoglycerate kinase; Provisional
Nucleotide Protein
Heading Accession and Version

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