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Rfx2 regulatory factor X2 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101957930, updated on 8-Mar-2024

Summary

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Gene symbol
Rfx2
Gene description
regulatory factor X2
Locus tag
H1C71_007588
See related
EnsemblRapid:ENSSTOG00015022868
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405118.1 (214334927..214371503)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936588.1 (3463226..3499841, complement)

NW_024405118.1Genomic Context describing neighboring genes Neighboring gene long-chain-fatty-acid--CoA ligase ACSBG2 Neighboring gene uncharacterized LOC120891540 Neighboring gene RAN binding protein 3 Neighboring gene uncharacterized LOC120891541 Neighboring gene calcyphosine

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein RFX2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405118.1 Reference HiC_Itri_2 Primary Assembly

    Range
    214334927..214371503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005332078.3 → XP_005332135.1  DNA-binding protein RFX2 isoform X1

    UniProtKB/TrEMBL
    I3N8X3
    Related
    ENSSTOP00015028326.1, ENSSTOT00015030763.1
    Conserved Domains (2) summary
    pfam02257
    Location:197 → 269
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 150
    RFX1_trans_act; RFX1 transcription activation region

  2. XM_005332079.3 → XP_005332136.1  DNA-binding protein RFX2 isoform X2

    UniProtKB/TrEMBL
    A0A287D0Y9
    Conserved Domains (2) summary
    pfam02257
    Location:169 → 244
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:4 → 150
    RFX1_trans_act; RFX1 transcription activation region
Nucleotide Protein
Heading Accession and Version

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