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RNVU1-15 RNA, variant U1 small nuclear 15 [ Homo sapiens (human) ]

Gene ID: 101954267, updated on 17-Sep-2024

Summary

Official Symbol
RNVU1-15provided by HGNC
Official Full Name
RNA, variant U1 small nuclear 15provided by HGNC
Primary source
HGNC:HGNC:48320
See related
Ensembl:ENSG00000207205 AllianceGenome:HGNC:48320
Gene type
snRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
vU1.15; vU1.16; RNU1-66; RNU1-121; RNVU1-16
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Genomic context

See RNVU1-15 in Genome Data Viewer
Location:
1q21.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (144412576..144412740)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (143653861..143654025, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (148604908..148605072, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene extensin Neighboring gene Sharpr-MPRA regulatory region 1883 duplicate 2 Neighboring gene OCT4 hESC enhancer GRCh37_chr1:148645625-148646126 Neighboring gene peptidylprolyl isomerase A like 4E Neighboring gene hESC enhancers GRCh37_chr1:148603911-148604598 and GRCh37_chr1:148766495-148767201 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:148603221-148603910 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:148760689-148761190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1257 Neighboring gene tRNA-Asn (anticodon GTT) 3-1 Neighboring gene NBPF member 15 Neighboring gene profilin 1 pseudogene 6

Genomic regions, transcripts, and products

General gene information

Other Names

  • RNA, variant U1 small nuclear 16

Clone Names

  • FLJ39739

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables pre-mRNA 5'-splice site binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104076.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC246785
    Related
    ENST00000384476.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    144412576..144412740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    143653861..143654025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)